Let KAYAK do the searching
KAYAK users have found double rooms in Kyoto Prefecture for as cheap as $26 (Kyoto) in the last 3 days. The average price is $350.
In the last 72 hours, users have found Kyoto Prefecture hotels for tonight for as low as $43 (Fukuchiyama). Users have also found 4-star+ hotels from $43 (Fukuchiyama).